ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5ZYF8_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5ZYF8_nD1

Q5ZYF8_nD1

UID: 004048836

AlphaFold

Range: 1-100,291-300
AlphaFold: AF-Q5ZYF8
UniProt: Q5ZYF8 (all domains)
Gene: rimK

Protein: Probable alpha-L-glutamate ligase (EC 6.3.2.-)

3D Structure

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Related Domains

Browse other domains in Rimk_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupPreATP-grasp domain(2003.1.10)

FFamilyRimk_N(2003.1.10.14)

Pfam Families

RimK PreATP-grasp domain

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q5ZYF8 UniProt: Q5ZYF8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-100,291-300