ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5NFB0_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5NFB0_nD2

Q5NFB0_nD2

UID: 004056009

AlphaFold

Range: 111-425
AlphaFold: AF-Q5NFB0
UniProt: Q5NFB0 (all domains)
Gene: serS

Protein: Serine--tRNA ligase (EC 6.1.1.11) (Seryl-tRNA synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase)

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

AlphaFold DB: Q5NFB0 UniProt: Q5NFB0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 111-425