ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m5mA1 - ECOD Domain | ECOD

ECOD/Domains/e3m5mA1

e3m5mA1

UID: 000406118

PDB

Range: A:986-1179
PDB: 3M5M chain A(all domains)
UniProt: A8DG50 (all domains)

Molecule: NS3/4A

3D Structure

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Related Domains

Browse other domains in Peptidase_S29 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_S29(1.1.5.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF02907Peptidase_S29

Hepatitis C virus NS3 protease

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 3M5M RCSB PDB: 3M5M PDBe: 3M5M UniProt: A8DG50

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.