ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
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Q5JIR5_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5JIR5_nD2

Q5JIR5_nD2

UID: 004062224

AlphaFold

Range: 61-145
AlphaFold: AF-Q5JIR5
UniProt: Q5JIR5 (all domains)
Gene: rrp4

Protein: Exosome complex component Rrp4

3D Structure

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Related Domains

Browse other domains in RRP4_S1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyRRP4_S1(2.1.1.109)

Pfam Families

PF21266S1_RRP4

RRP4, S1 domain

ClanCL0021OB

External Links

AlphaFold DB: Q5JIR5 UniProt: Q5JIR5

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 61-145