ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5HGF6_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5HGF6_nD1

Q5HGF6_nD1

UID: 004065800

AlphaFold

Range: 6-210,366-450
AlphaFold: AF-Q5HGF6
UniProt: Q5HGF6 (all domains)
Gene: rnj2

Protein: Ribonuclease J 2 (RNase J2) (EC 3.1.-.-)

3D Structure

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Related Domains

Browse other domains in Lactamase_B,RMMBL →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B,RMMBL(247.1.1.2)

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

External Links

AlphaFold DB: Q5HGF6 UniProt: Q5HGF6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-210,366-450