ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A5FG67_nD2 - ECOD Domain | ECOD

ECOD/Domains/A5FG67_nD2

A5FG67_nD2

UID: 004074516

AlphaFold

Range: 186-360
AlphaFold: AF-A5FG67
UniProt: A5FG67 (all domains)
Gene: menD

Protein: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (SEPHCHC synthase) (EC 2.2.1.9) (Menaquinone biosynthesis protein MenD)

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_M_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilyTPP_enzyme_M_2(2003.1.4.10)

Pfam Families

PF16582TPP_enzyme_M_2

Middle domain of thiamine pyrophosphate

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: A5FG67 UniProt: A5FG67

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 186-360