ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O59245_nD4 - ECOD Domain | ECOD

ECOD/Domains/O59245_nD4

O59245_nD4

UID: 004080235

AlphaFold

Range: 1-90,486-870
AlphaFold: AF-O59245
UniProt: O59245 (all domains)
Gene: rtcB

Protein: tRNA-splicing ligase RtcB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) (tRNA ligase RtcB) [Cleaved into: Pho hyp2 intein (EC 3.1.-.-)]

3D Structure

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Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Pfam Families

tRNA-splicing ligase RtcB

External Links

AlphaFold DB: O59245 UniProt: O59245

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-90,486-870