ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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O58088_nD2 - ECOD Domain | ECOD

ECOD/Domains/O58088_nD2

O58088_nD2

UID: 004090344

AlphaFold

Range: 121-239
AlphaFold: AF-O58088
UniProt: O58088 (all domains)
Gene: cas6nc

Protein: Putative CRISPR-associated endoribonuclease-like protein Cas6nc (PhCas6nc)

3D Structure

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Related Domains

Browse other domains in Cas_Cas6_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCas_Cas6_C(304.51.1.1)

Pfam Families

PF01881Cas_Cas6_C

CRISPR associated protein Cas6, C-terminal

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: O58088 UniProt: O58088

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 121-239