ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
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P62558_nD2 - ECOD Domain | ECOD

ECOD/Domains/P62558_nD2

P62558_nD2

UID: 004096964

AlphaFold

Range: 156-270
AlphaFold: AF-P62558
UniProt: P62558 (all domains)
Gene: sopB

Protein: Protein SopB (Plasmid partition protein B)

3D Structure

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Related Domains

Browse other domains in SoPB_HTH →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySoPB_HTH(101.1.1.78)

Pfam Families

PF18090SoPB_HTH

Centromere-binding protein HTH domain

ClanCL0123HTH

External Links

AlphaFold DB: P62558 UniProt: P62558

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 156-270