ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q4KIF4_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q4KIF4_nD3

Q4KIF4_nD3

UID: 004103008

AlphaFold

Range: 241-300
AlphaFold: AF-Q4KIF4
UniProt: Q4KIF4 (all domains)
Gene: truB

Protein: tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)

3D Structure

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Related Domains

Browse other domains in TruB-C_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyTruB-C_2(1.1.9.11)

Pfam Families

PF09157TruB-C_2

Pseudouridine synthase II TruB, C-terminal

ClanCL0178PUA

External Links

AlphaFold DB: Q4KIF4 UniProt: Q4KIF4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 241-300