ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A3D5F8_nD3 - ECOD Domain | ECOD

ECOD/Domains/A3D5F8_nD3

A3D5F8_nD3

UID: 004127469

AlphaFold

Range: 291-370
AlphaFold: AF-A3D5F8
UniProt: A3D5F8 (all domains)
Gene: mnmA

Protein: tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA_Me_trans_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilytRNA_Me_trans_C(1.1.8.5)

Pfam Families

PF20258tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

ClanCL0740GCV_T_C

External Links

AlphaFold DB: A3D5F8 UniProt: A3D5F8

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 291-370