ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3q24A5 - ECOD Domain | ECOD

ECOD/Domains/e3q24A5

e3q24A5

UID: 000413045

PDB

Range: A:551-597,A:918-1100
PDB: 3Q24 chain A(all domains)
UniProt: Q859P9 (all domains)
Gene: 50

Molecule: Virion RNA polymerase

3D Structure

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Related Domains

Browse other domains in vRNAP_dom →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyvRNAP_dom(304.48.1.29)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Dihydrogenphosphate2HP
drugDrugBank DB02831within 5 Å only

Pfam Families

PF21769vRNAP_dom

Virion DNA-directed RNA polymerase domain

External Links

ECOD PDB View: 3Q24 RCSB PDB: 3Q24 PDBe: 3Q24 UniProt: Q859P9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Guanosine-5'-Monophosphate5GP

drugDrugBank DB01972within 5 Å only

PYROPHOSPHATE 2-POP

Shown in the structure viewer. Drug annotations from DrugDomain.