ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pkmX1 - ECOD Domain | ECOD

ECOD/Domains/e3pkmX1

e3pkmX1

UID: 000414226

PDB

Range: X:129-245
PDB: 3PKM chain X(all domains)
UniProt: Q8U1S4 (all domains)
Gene: cas6

Molecule: CRISPR-associated endoribonuclease Cas6 (EC 3.1.-.-)

3D Structure

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Related Domains

Browse other domains in Cas_Cas6_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCas_Cas6_C(304.51.1.1)

Pfam Families

PF01881Cas_Cas6_C

CRISPR associated protein Cas6, C-terminal

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 3PKM RCSB PDB: 3PKM PDBe: 3PKM UniProt: Q8U1S4

Downloads

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