ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
RCSB PDB
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Q5HJ88_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5HJ88_nD1

Q5HJ88_nD1

UID: 004146635

AlphaFold

Range: 6-80
AlphaFold: AF-Q5HJ88
UniProt: Q5HJ88 (all domains)

3D Structure

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Related Domains

Browse other domains in YukD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyYukD(221.1.1.34)

Pfam Families

WXG100 protein secretion system (Wss), protein YukD

ClanCL0072Ubiquitin

External Links

AlphaFold DB: Q5HJ88 UniProt: Q5HJ88

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-80