ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5PR55_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5PR55_nD1

Q5PR55_nD1

UID: 004173672

RepresentativeAlphaFold

Range: 12-80,141-309
AlphaFold: AF-Q5PR55
UniProt: Q5PR55 (all domains)
Gene: zgc:103499

Protein: RNA ligase 1 (EC 6.5.1.3) (RNA ligase) (Rnl)

3D Structure

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Related Domains

Browse other domains in DUF5565 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDUF5565(206.1.3.35)

Pfam Families

RNA ligase 1

ClanCL0179ATP-grasp

External Links

AlphaFold DB: Q5PR55 UniProt: Q5PR55

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 12-80,141-309