ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F3R2_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5F3R2_nD2

Q5F3R2_nD2

UID: 004177552

AlphaFold

Range: 286-335
AlphaFold: AF-Q5F3R2
UniProt: Q5F3R2 (all domains)
Gene: KDM5B

Protein: Lysine-specific demethylase 5B (EC 1.14.11.67) (Histone demethylase JARID1B) (Jumonji/ARID domain-containing protein 1B) ([histone H3]-trimethyl-L-lysine(4) demethylase 5B)

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD(376.1.3.1)

Pfam Families

PHD-finger

ClanCL0229RING

External Links

AlphaFold DB: Q5F3R2 UniProt: Q5F3R2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 286-335