ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5ZYF8_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5ZYF8_nD2

Q5ZYF8_nD2

UID: 004179647

AlphaFold

Range: 101-290
AlphaFold: AF-Q5ZYF8
UniProt: Q5ZYF8 (all domains)
Gene: rimK

Protein: Probable alpha-L-glutamate ligase (EC 6.3.2.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RimK →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRimK(206.1.3.21)

Pfam Families

RimK-like ATP-grasp domain

ClanCL0179ATP-grasp

External Links

AlphaFold DB: Q5ZYF8 UniProt: Q5ZYF8

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 101-290