ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3q80B1 - ECOD Domain | ECOD

ECOD/Domains/e3q80B1

e3q80B1

UID: 000418423

PDB

Range: B:6-231
PDB: 3Q80 chain B(all domains)
UniProt: P9WKG9 (all domains)
Gene: ispD

Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritolCDM
drugDrugBank DB03687
Chloride ionCL
Magnesium ionMG

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 3Q80 RCSB PDB: 3Q80 PDBe: 3Q80 UniProt: P9WKG9

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.