ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q6LYM1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q6LYM1_nD3

Q6LYM1_nD3

UID: 004228621

AlphaFold

Range: 221-440
AlphaFold: AF-Q6LYM1
UniProt: Q6LYM1 (all domains)
Gene: lig

Protein: DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])

3D Structure

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Related Domains

Browse other domains in DNA_ligase_A_M →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDNA_ligase_A_M(206.1.3.1)

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

External Links

AlphaFold DB: Q6LYM1 UniProt: Q6LYM1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 221-440