ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8U1S4_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8U1S4_nD1

Q8U1S4_nD1

UID: 004229899

AlphaFold

Range: 1-120
AlphaFold: AF-Q8U1S4
UniProt: Q8U1S4 (all domains)
Gene: cas6

Protein: CRISPR-associated endoribonuclease Cas6 (EC 3.1.-.-)

3D Structure

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Related Domains

Browse other domains in Cas6_I-A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCas6_I-A(304.51.1.13)

Pfam Families

PF21350Cas6_I-A

CRISPR-associated protein Cas6, N-terminal

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: Q8U1S4 UniProt: Q8U1S4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-120