ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q8D5N2_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8D5N2_nD2

Q8D5N2_nD2

UID: 004233759

AlphaFold

Range: 326-420
AlphaFold: AF-Q8D5N2
UniProt: Q8D5N2 (all domains)

3D Structure

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Related Domains

Browse other domains in S4, SYY_C-terminal →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupAlpha-L RNA-binding motif(221.1.2)

FFamilyS4, SYY_C-terminal(221.1.2.15)

Pfam Families

S4 domain

ClanCL0492S4

PF22421SYY_C-terminal

Tyrosine--tRNA ligase SYY-like C-terminal domain

ClanCL0492S4

External Links

AlphaFold DB: Q8D5N2 UniProt: Q8D5N2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 326-420