ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

B5YD88_nD2 - ECOD Domain | ECOD

ECOD/Domains/B5YD88_nD2

B5YD88_nD2

UID: 004243847

AlphaFold

Range: 101-425
AlphaFold: AF-B5YD88
UniProt: B5YD88 (all domains)

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_ligase_A_M+DNA_ligase_A_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupATP-dependent DNA ligase DNA-binding domain(4095)

HH-groupATP-dependent DNA ligase DNA-binding domain(4095.1)

TT-groupATP-dependent DNA ligase DNA-binding domain(4095.1.1)

FFamilyDNA_ligase_A_M+DNA_ligase_A_N(4095.1.1.2)

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

PF04675DNA_ligase_A_N

DNA ligase N terminus

External Links

AlphaFold DB: B5YD88 UniProt: B5YD88

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 101-425