ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3axtA1 - ECOD Domain | ECOD

ECOD/Domains/e3axtA1

e3axtA1

UID: 000425402

PDB

Range: A:1-387
PDB: 3AXT chain A(all domains)
UniProt: O67010 (all domains)
Gene: trm1

Molecule: Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1

3D Structure

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Related Domains

Browse other domains in TRM →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyTRM(2003.1.5.19)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Pfam Families

N2,N2-dimethylguanosine tRNA methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3AXT RCSB PDB: 3AXT PDBe: 3AXT UniProt: O67010

Downloads

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Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.