ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
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Q5PBG3_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5PBG3_nD3

Q5PBG3_nD3

UID: 004254701

AlphaFold

Range: 346-375,416-500
AlphaFold: AF-Q5PBG3
UniProt: Q5PBG3 (all domains)

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

AlphaFold DB: Q5PBG3 UniProt: Q5PBG3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 346-375,416-500