ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q9KN42_nD5 - ECOD Domain | ECOD

ECOD/Domains/Q9KN42_nD5

Q9KN42_nD5

UID: 004258527

AlphaFold

Range: 371-460
AlphaFold: AF-Q9KN42
UniProt: Q9KN42 (all domains)
Gene: vgrG3

Protein: Type VI secretion system spike protein VgrG3 (Muramidase Vgrg3C) (EC 3.2.1.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Phage_base_V →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupTail-associated lysozyme gp5-N(2.7)

TT-groupTail-associated lysozyme gp5-N(2.7.1)

FFamilyPhage_base_V(2.7.1.1)

Pfam Families

PF04717Phage_base_V

Type VI secretion system/phage-baseplate injector OB domain

ClanCL0021OB

External Links

AlphaFold DB: Q9KN42 UniProt: Q9KN42

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 371-460