ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3o2xA1 - ECOD Domain | ECOD

ECOD/Domains/e3o2xA1

e3o2xA1

UID: 000425981

PDB

Range: A:1104-1267
PDB: 3O2X chain A(all domains)
UniProt: P45452 (all domains)
Gene: MMP13

Molecule: Collagenase 3

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

N-hydroxy-1-(2-methoxyethyl)-4-{[4-(3-{5-[4-(trifluoromethoxy)phenyl]-2H-tetrazol-2-yl}propoxy)phenyl]sulfonyl}piperidine-4-carboxamide3O2
Calcium ionCA
metal
Zinc ionZN

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 3O2X RCSB PDB: 3O2X PDBe: 3O2X UniProt: P45452

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (HEPES, Sulfate ion)

HEPESEPE
DrugBank DB16872
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.