ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A5VTB4_nD1 - ECOD Domain | ECOD

ECOD/Domains/A5VTB4_nD1

A5VTB4_nD1

UID: 004273115

AlphaFold

Range: 11-225,248-260
AlphaFold: AF-A5VTB4
UniProt: A5VTB4 (all domains)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TruB_N,TruB_C_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyTruB_N,TruB_C_2(304.102.1.6)

Pfam Families

TruB family pseudouridylate synthase (N terminal domain)

ClanCL0649PseudoU_synth

PF16198TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: A5VTB4 UniProt: A5VTB4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-225,248-260