ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A5F5F3_nD2 - ECOD Domain | ECOD

ECOD/Domains/A5F5F3_nD2

A5F5F3_nD2

UID: 004276766

AlphaFold

Range: 236-320
AlphaFold: AF-A5F5F3
UniProt: A5F5F3 (all domains)
Gene: VC0395_A2049

Protein: tRNA-modifying protein YgfZ

3D Structure

Loading viewer...

Related Domains

Browse other domains in YgfZ_barrel →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilyYgfZ_barrel(1.1.8.7)

Pfam Families

PF21130YgfZ_barrel

YgfZ, beta-barrel domain

ClanCL0740GCV_T_C

External Links

AlphaFold DB: A5F5F3 UniProt: A5F5F3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 236-320