ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9KN42_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9KN42_nD2

Q9KN42_nD2

UID: 004299219

AlphaFold

Range: 106-190
AlphaFold: AF-Q9KN42
UniProt: Q9KN42 (all domains)
Gene: vgrG3

Protein: Type VI secretion system spike protein VgrG3 (Muramidase Vgrg3C) (EC 3.2.1.-)

3D Structure

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Related Domains

Browse other domains in Phage_GPD →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN0 domain in phage tail proteins and secretins-like(3070)

HH-groupN0 domain in phage tail proteins and secretins(3070.1)

TT-groupN0 domain in phage tail proteins and secretins(3070.1.1)

FFamilyPhage_GPD(3070.1.1.2)

Pfam Families

PF05954Phage_GPD

Phage tail baseplate hub (GPD)

ClanCL0504Phage_barrel

External Links

AlphaFold DB: Q9KN42 UniProt: Q9KN42

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 106-190