ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3tqmD1 - ECOD Domain | ECOD

ECOD/Domains/e3tqmD1

e3tqmD1

UID: 000429989

PDB

Range: D:1-93
PDB: 3TQM chain D(all domains)
UniProt: Q83DI6 (all domains)
Gene: CBU_0745

Molecule: Ribosome-associated factor Y

3D Structure

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Related Domains

Browse other domains in Ribosomal_S30AE →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupRibosome binding protein Y (YfiA homologue)(330.2)

TT-groupRibosome binding protein Y (YfiA homologue)(330.2.1)

FFamilyRibosomal_S30AE(330.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02482Ribosomal_S30AE

Sigma 54 modulation protein / S30EA ribosomal protein

ClanCL0219RNase_H

External Links

ECOD PDB View: 3TQM RCSB PDB: 3TQM PDBe: 3TQM UniProt: Q83DI6

Downloads

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