ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5NFU1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5NFU1_nD1

Q5NFU1_nD1

UID: 004319279

AlphaFold

Range: 1-159
AlphaFold: AF-Q5NFU1
UniProt: Q5NFU1 (all domains)
Gene: ispF

Protein: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECDP-synthase) (MECPP-synthase) (MECPS) (EC 4.6.1.12)

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Pfam Families

YgbB family

External Links

AlphaFold DB: Q5NFU1 UniProt: Q5NFU1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-159