ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8PUP4_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8PUP4_nD2

Q8PUP4_nD2

UID: 004325127

AlphaFold

Range: 196-255
AlphaFold: AF-Q8PUP4
UniProt: Q8PUP4 (all domains)
Gene: rlmE

Protein: Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.166) (23S rRNA Um2552 methyltransferase) (rRNA (uridine-2'-O-)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in TRAM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyTRAM(2.1.1.18)

Pfam Families

TRAM domain

ClanCL0021OB

External Links

AlphaFold DB: Q8PUP4 UniProt: Q8PUP4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 196-255