ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8PVR7_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q8PVR7_nD2

Q8PVR7_nD2

UID: 004325132

AlphaFold

Range: 101-430
AlphaFold: AF-Q8PVR7
UniProt: Q8PVR7 (all domains)
Gene: lig1

Protein: DNA ligase 1 (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP] 1)

3D Structure

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Related Domains

Browse other domains in DNA_ligase_A_M+DNA_ligase_A_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupATP-dependent DNA ligase DNA-binding domain(4095)

HH-groupATP-dependent DNA ligase DNA-binding domain(4095.1)

TT-groupATP-dependent DNA ligase DNA-binding domain(4095.1.1)

FFamilyDNA_ligase_A_M+DNA_ligase_A_N(4095.1.1.2)

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

PF04675DNA_ligase_A_N

DNA ligase N terminus

External Links

AlphaFold DB: Q8PVR7 UniProt: Q8PVR7

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 101-430