ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q87AF2_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q87AF2_nD1

Q87AF2_nD1

UID: 004334789

AlphaFold

Range: 106-210
AlphaFold: AF-Q87AF2
UniProt: Q87AF2 (all domains)
Gene: rsmH

Protein: Ribosomal RNA small subunit methyltransferase H (EC 2.1.1.199) (16S rRNA m(4)C1402 methyltransferase) (rRNA (cytosine-N(4)-)-methyltransferase RsmH)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltransf_5 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyMethyltransf_5(102.1.1.6)

Pfam Families

PF01795Methyltransf_5

MraW methylase family

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q87AF2 UniProt: Q87AF2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 106-210