ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

B3DQF2_nD2 - ECOD Domain | ECOD

ECOD/Domains/B3DQF2_nD2

B3DQF2_nD2

UID: 004342581

AlphaFold

Range: 326-385
AlphaFold: AF-B3DQF2
UniProt: B3DQF2 (all domains)
Gene: truB

Protein: tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TruB_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyTruB_C(1.1.9.10)

Pfam Families

tRNA Pseudouridine synthase II, C terminal

ClanCL0178PUA

External Links

AlphaFold DB: B3DQF2 UniProt: B3DQF2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 326-385