ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A1VQF1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A1VQF1_nD1

A1VQF1_nD1

UID: 004365656

AlphaFold

Range: 21-85
AlphaFold: AF-A1VQF1
UniProt: A1VQF1 (all domains)
Gene: rlmD

Protein: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) (23S rRNA(m5U1939)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in TRAM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyTRAM(2.1.1.18)

Pfam Families

TRAM domain

ClanCL0021OB

External Links

AlphaFold DB: A1VQF1 UniProt: A1VQF1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-85