ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A4VRF3_nD3 - ECOD Domain | ECOD

ECOD/Domains/A4VRF3_nD3

A4VRF3_nD3

UID: 004379960

AlphaFold

Range: 391-555
AlphaFold: AF-A4VRF3
UniProt: A4VRF3 (all domains)
Gene: ligB

Protein: DNA ligase B (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)] B)

3D Structure

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Related Domains

Browse other domains in HHH_5 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH_5(102.1.1.27)

Pfam Families

SAM-like Helix-hairpin-helix tandem

ClanCL0198HHH

External Links

AlphaFold DB: A4VRF3 UniProt: A4VRF3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 391-555