ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q88F25_nD4 - ECOD Domain | ECOD

ECOD/Domains/Q88F25_nD4

Q88F25_nD4

UID: 004404544

AlphaFold

Range: 401-595
AlphaFold: AF-Q88F25
UniProt: Q88F25 (all domains)
Gene: ligA

Protein: DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)])

3D Structure

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Related Domains

Browse other domains in HHH_2+HHH_5 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH_2+HHH_5(102.1.1.81)

Pfam Families

Helix-hairpin-helix motif

ClanCL0198HHH

SAM-like Helix-hairpin-helix tandem

ClanCL0198HHH

External Links

AlphaFold DB: Q88F25 UniProt: Q88F25

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 401-595