ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1pdlC3 - ECOD Domain | ECOD

ECOD/Domains/e1pdlC3

e1pdlC3

UID: 000441020

PDB

Range: C:6-129
PDB: 1PDL chain C(all domains)
UniProt: P16009 (all domains)
Gene: 5

Molecule: Pre-baseplate central spike protein Gp5 (Pre-Gp5) (Peptidoglycan hydrolase gp5) (EC 3.2.1.17) [Cleaved into: Baseplate central spike protein Gp5* (Mature Gp5); Gp5C]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gp5_OB →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupTail-associated lysozyme gp5-N(2.7)

TT-groupTail-associated lysozyme gp5-N(2.7.1)

FFamilyGp5_OB(2.7.1.2)

Pfam Families

Gp5 N-terminal OB domain

ClanCL0021OB

External Links

ECOD PDB View: 1PDL RCSB PDB: 1PDL PDBe: 1PDL UniProt: P16009

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure