ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5SII2_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5SII2_nD2

Q5SII2_nD2

UID: 004418273

AlphaFold

Range: 311-385
AlphaFold: AF-Q5SII2
UniProt: Q5SII2 (all domains)
Gene: rsmF

Protein: Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) (EC 2.1.1.178) (rRNA (cytosine-C(5)-)-methyltransferase RsmF)

3D Structure

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Related Domains

Browse other domains in RsmF_methylt_CI →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCystatin-like(243)

HH-groupPre-PUA domain(243.6)

TT-groupPre-PUA domain(243.6.1)

FFamilyRsmF_methylt_CI(243.6.1.3)

Pfam Families

PF17126RsmF_methylt_CI

RsmF rRNA methyltransferase first C-terminal domain

ClanCL0668Pre-PUA

External Links

AlphaFold DB: Q5SII2 UniProt: Q5SII2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 311-385