ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q12391_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q12391_nD1

Q12391_nD1

UID: 004443641

AlphaFold

Range: 176-260
AlphaFold: AF-Q12391
UniProt: Q12391 (all domains)
Gene: TY1A-NL1

Protein: Transposon Ty1-NL1 Gag polyprotein (Gag-p49) (Transposon Ty1 protein A) (TY1A) (TYA) (p58) [Cleaved into: Capsid protein (CA) (Gag-p45) (p54); Gag-p4]

3D Structure

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Related Domains

Browse other domains in TYA →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyTYA(170.2.1.26)

Pfam Families

Ty transposon capsid protein

ClanCL0523GAG-polyprotein

External Links

AlphaFold DB: Q12391 UniProt: Q12391

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-260