ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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B2JIM3_nD2 - ECOD Domain | ECOD

ECOD/Domains/B2JIM3_nD2

B2JIM3_nD2

UID: 004448354

AlphaFold

Range: 126-410
AlphaFold: AF-B2JIM3
UniProt: B2JIM3 (all domains)

3D Structure

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Related Domains

Browse other domains in HD,PolyA_pol_RNAbd →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupPoly A polymerase C-terminal region-like(131.2)

TT-groupPoly A polymerase C-terminal region-like(131.2.1)

FFamilyHD,PolyA_pol_RNAbd(131.2.1.1)

Pfam Families

HD domain

ClanCL0237HD_PDEase

PF12627PolyA_pol_RNAbd

Probable RNA and SrmB- binding site of polymerase A

External Links

AlphaFold DB: B2JIM3 UniProt: B2JIM3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 126-410