ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q6FYV9_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q6FYV9_nD2

Q6FYV9_nD2

UID: 004464057

AlphaFold

Range: 141-639
AlphaFold: AF-Q6FYV9
UniProt: Q6FYV9 (all domains)
Gene: virD4

Protein: Type IV secretion system-coupling protein VirD4 (EC 3.6.4.6)

3D Structure

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Related Domains

Browse other domains in T4SS-DNA_transf, TraG-D_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyT4SS-DNA_transf, TraG-D_C(2004.1.1.552)

Pfam Families

PF02534T4SS-DNA_transf

Type IV secretory system Conjugative DNA transfer

ClanCL0023P-loop_NTPase

PF12696TraG-D_C

TraM recognition site of TraD and TraG

ClanCL0023P-loop_NTPase

External Links

AlphaFold DB: Q6FYV9 UniProt: Q6FYV9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 141-639