ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3sl4B1 - ECOD Domain | ECOD

ECOD/Domains/e3sl4B1

e3sl4B1

UID: 000446736

PDB

Range: B:88-412
PDB: 3SL4 chain B(all domains)
UniProt: Q08499 (all domains)
Gene: PDE4D

Molecule: cAMP-specific 3',5'-cyclic phosphodiesterase 4D

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

ethenyl 6-(ethenylcarbamoyl)-2-[(phenylacetyl)amino]-4,5,6,7-tetrahydrothieno[2,3-c]pyridine-3-carboxylateJN4
Zinc ionZN
metal

+ 4 additives (Dimethyl sulfoxide, HEPES, Phosphate ion, …)

Dimethyl sulfoxide

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 3SL4 RCSB PDB: 3SL4 PDBe: 3SL4 UniProt: Q08499

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

HEPESEPE

DrugBank DB16872

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.