ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ubhL1 - ECOD Domain | ECOD

ECOD/Domains/e1ubhL1

e1ubhL1

UID: 000044721

PDB

Range: L:330-380
PDB: 1UBH chain L(all domains)
UniProt: P21852 (all domains)
Gene: hydB

Molecule: Periplasmic [NiFe] hydrogenase large subunit

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturebeta meanders(a.2)

XX-groupall-beta domain in nickel-iron hydrogenase large subunit(4046)

HH-groupall-beta domain in nickel-iron hydrogenase large subunit(4046.1)

TT-groupall-beta domain in nickel-iron hydrogenase large subunit(4046.1.1)

FFamilyNiFeSe_Hases(4046.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 1UBH RCSB PDB: 1UBH PDBe: 1UBH UniProt: P21852

Downloads

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Drug annotations from DrugDomain.