ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

C5C2D6_nD1 - ECOD Domain | ECOD

ECOD/Domains/C5C2D6_nD1

C5C2D6_nD1

UID: 004488583

AlphaFold

Range: 1-215
AlphaFold: AF-C5C2D6
UniProt: C5C2D6 (all domains)

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA_Me_trans →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA_Me_trans(2005.1.1.23)

Pfam Families

PF03054tRNA_Me_trans

tRNA methyl transferase HUP domain

ClanCL0039HUP

External Links

AlphaFold DB: C5C2D6 UniProt: C5C2D6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-215