ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5PJF4_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5PJF4_nD2

Q5PJF4_nD2

UID: 004498228

AlphaFold

Range: 246-325
AlphaFold: AF-Q5PJF4
UniProt: Q5PJF4 (all domains)
Gene: ygfZ

Protein: tRNA-modifying protein YgfZ

3D Structure

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Related Domains

Browse other domains in YgfZ_barrel →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilyYgfZ_barrel(1.1.8.7)

Pfam Families

PF21130YgfZ_barrel

YgfZ, beta-barrel domain

ClanCL0740GCV_T_C

External Links

AlphaFold DB: Q5PJF4 UniProt: Q5PJF4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 246-325