ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A4VRF3_nD1 - ECOD Domain | ECOD

ECOD/Domains/A4VRF3_nD1

A4VRF3_nD1

UID: 004501648

AlphaFold

Range: 21-310
AlphaFold: AF-A4VRF3
UniProt: A4VRF3 (all domains)
Gene: ligB

Protein: DNA ligase B (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)] B)

3D Structure

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Related Domains

Browse other domains in DNA_ligase_aden →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDNA_ligase_aden(206.1.3.5)

Pfam Families

PF01653DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

ClanCL0179ATP-grasp

External Links

AlphaFold DB: A4VRF3 UniProt: A4VRF3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-310