ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
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B2VDB4_nD1 - ECOD Domain | ECOD

ECOD/Domains/B2VDB4_nD1

B2VDB4_nD1

UID: 004550664

AlphaFold

Range: 36-125
AlphaFold: AF-B2VDB4
UniProt: B2VDB4 (all domains)

3D Structure

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Related Domains

Browse other domains in SecD-TM1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin domains in multidrug efflux transporter(304.28)

TT-groupMultidrug efflux transporter AcrB pore domain(304.28.1)

FFamilySecD-TM1(304.28.1.3)

Pfam Families

PF13721SecD-TM1

SecD export protein N-terminal TM region

External Links

AlphaFold DB: B2VDB4 UniProt: B2VDB4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 36-125