ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5F3R2_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5F3R2_nD3

Q5F3R2_nD3

UID: 004583283

AlphaFold

Range: 6-75,191-200,341-580
AlphaFold: AF-Q5F3R2
UniProt: Q5F3R2 (all domains)
Gene: KDM5B

Protein: Lysine-specific demethylase 5B (EC 1.14.11.67) (Histone demethylase JARID1B) (Jumonji/ARID domain-containing protein 1B) ([histone H3]-trimethyl-L-lysine(4) demethylase 5B)

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

AlphaFold DB: Q5F3R2 UniProt: Q5F3R2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-75,191-200,341-580